RnoEX0045039 @ rn6
Exon Skipping
Gene
ENSRNOG00000001518 | Itga6
Description
integrin subunit alpha 6 [Source:RGD Symbol;Acc:621633]
Coordinates
chr3:58486662-58492375:+
Coord C1 exon
chr3:58486662-58486750
Coord A exon
chr3:58487766-58487884
Coord C2 exon
chr3:58492277-58492375
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGCCTGTGCATGCGTTCCAGGTT
3' ss Score
8.38
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ATATTGCTGTTGGAGCTCCCTATGACGATCTGGGGAAGGTTTTTATCTATCATGGATCCCCGACTGGCATAATTACCAAGCCAACACAG
Seq A exon
GTTCTTGAGGGTACAACGCCTTTCTTCGGCTACTCAATCGCTGGGAACATGGACCTGGACAGGAATTCCTACCCTGACGTTGCTGTGGGTTCCCTCTCAGACTCAGTAACTATTTTCAG
Seq C2 exon
ATCCCGGCCAGTGATTAACATTCTGAAAACCATCACAGTGACTCCTAGCAGAATTGACCTCCGCCAGAAATCCATGTGTGGGTCACCTAGCGGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001518-'17-11,'17-10,18-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135171=VCBS=PD(4.1=10.0)
A:
NO
C2:
PF084417=Integrin_alpha2=PU(6.7=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGAGCTCCCTATGACGA
R:
CATATCCCGCTAGGTGACCCA
Band lengths:
181-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]