GgaEX1030694 @ galGal3
Exon Skipping
Gene
ENSGALG00000009362 | ITA6_CHICK
Description
NA
Coordinates
chr7:19103760-19106370:-
Coord C1 exon
chr7:19106279-19106370
Coord A exon
chr7:19105385-19105512
Coord C2 exon
chr7:19103760-19103855
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCAATCTGTTTCCTCTTTAGATT
3' ss Score
11.17
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
CAGATATTGCAGTAGGGGCTCCATATGATGGTTTTGGCAAAGTATATATATATCATGGATCCAAGAATGGAATAAATACAGAACCAGCACAG
Seq A exon
ATTCTTGATGGTGAAAAAACAGGCACCAATTTCTTTGGTTACTCTATTGCTGGAAACATGGACCTGGATAAAAATTCCTACCCTGATATTGCTGTTGGTTCCCTTTCAGATTCTGTATCTGTGTTCAG
Seq C2 exon
ATCTCGACCTGTCATAAGCATTACAAAAAGCATTACAGTACAGCCTGACAAACTTGACCTGAAGAAAAAGAACCCTGAAGACCCCAGTGAAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009362-'9-16,'9-15,10-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.023 C2=0.182
Domain overlap (PFAM):
C1:
PF135171=VCBS=PD(5.3=12.9)
A:
PF0183918=FG-GAP=WD(100=72.1)
C2:
PF084417=Integrin_alpha2=PU(6.5=93.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATATTGCAGTAGGGGCTCC
R:
TATTTCACTGGGGTCTTCAGGGT
Band lengths:
186-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]