GgaEX1030694 @ galGal4
Exon Skipping
Gene
ENSGALG00000009362 | ITGA6
Description
integrin alpha-6 precursor [Source:RefSeq peptide;Acc:NP_990620]
Coordinates
chr7:17225573-17228176:-
Coord C1 exon
chr7:17228088-17228176
Coord A exon
chr7:17227197-17227324
Coord C2 exon
chr7:17225573-17225668
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCAATCTGTTTGCTCTTTAGATT
3' ss Score
9.76
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
ATATTGCAGTAGGGGCTCCATATGATGGTTTTGGCAAAGTATATATATATCATGGATCCAAGAATGGAATAAATACAGAACCAGCACAG
Seq A exon
ATTCTTGATGGTGAAAAAACAGGCACCAATTTCTTTGGTTACTCTATTGCTGGAAACATGGACCTGGATAAAAATTCCTACCCTGATATTGCTGTTGGTTCCCTTTCAGATTCTGTATCTGTGTTCAG
Seq C2 exon
ATCTCGACCTGTCATAAGCATTACAAAAAGCATTACAGTACAGCCTGACAAACTTGACCTGAAGAAAAAGAACCCTGAAGACCCCAGTGAAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009362-'15-15,'15-14,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.023 C2=0.182
Domain overlap (PFAM):
C1:
PF135171=VCBS=PD(4.1=10.0)
A:
PF0183918=FG-GAP=WD(100=72.1)
C2:
PF084417=Integrin_alpha2=PU(6.5=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGTAGGGGCTCCATATGA
R:
TTTCACTGGGGTCTTCAGGGT
Band lengths:
178-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]