Special

ENSG00000091409 @ hg38

Biotype
protein_coding
Gene Symbol
ITGA6
Description
integrin subunit alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:172427354-172506282:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
99.55
50
0
Alternative 3'ss
237
chr2:172484545-172484781
+
0.42
50
0
Alternative 5'ss
29
chr2:172474237-172474265
+
99.02
100
0
Alternative 5'ss
44
chr2:172474237-172474280
+
0.95
100
0
Alternative 5'ss
0
NA
+
7.68
66.17
0
Alternative 5'ss
45
chr2:172489614-172489658
+
92.32
66.17
0
Exon Skipping
80
chr2:172467481-172467560
+
96.43
54.78
0
Exon Skipping
256
chr2:172469125-172469380
+
97.68
27.27
0
Exon Skipping
132
chr2:172470974-172471105
+
98.16
36.55
0
Exon Skipping
117
chr2:172472774-172472890
+
0.87
35.25
1
Exon Skipping
174
chr2:172489485-172489658
+
96.22
48.35
0
Exon Skipping
130
chr2:172501772-172501901
+
45.62
100
11
Exon Skipping
178
chr2:172490212-172490389
+
1.43
30.22
0
Intron Retention
1365
chr2:172489659-172491023
+
7.8
51.18
0
Intron Retention
98
chr2:172491123-172491220
+
3.34
100
0
Intron Retention
93
chr2:172491332-172491424
+
5.6
100
0
Intron Retention
1564
chr2:172467561-172469124
+
4.9
77.78
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000027111 Itga6 1-to-1
Mouse mm9 ENSMUSG00000027111 Itga6 1-to-1
Rat rn6 ENSRNOG00000001518 Itga6 1-to-1
Cow bosTau6 ENSBTAG00000017266 ITGA6 1-to-1
Chicken galGal4 ENSGALG00000009362 ITGA6 1-to-1
Chicken galGal3 ENSGALG00000009362 ITA6_CHICK 3-to-1
Zebrafish danRer10 ENSDARG00000042282 itga6a 1-to-4
Zebrafish danRer10 ENSDARG00000056018 itga6l 1-to-4
Zebrafish danRer10 ENSDARG00000069946 itga6b 1-to-4
Zebrafish danRer10 ENSDARG00000099348 ITGA6 (4 of 4) 1-to-4
Fruitfly dm6 FBgn0004456 mew 3-to-1