HsaALTD1006616-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000091409 | ITGA6
Description
integrin subunit alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:172474055-172474977:+
Coord C1 exon
chr2:172474055-172474236
Coord A exon
chr2:172474237-172474280
Coord C2 exon
chr2:172474929-172474977
Length
44 bp
Sequences
Splice sites
5' ss Seq
CAGGTTATA
5' ss Score
1.5
3' ss Seq
TCCCCTCATTATGTTTTTAGGTG
3' ss Score
10.33
Exon sequences
Seq C1 exon
GTTTTTCTTTGGACTCAGGGAAAGGTATTGTTTCTAAAGATGAGATCACTTTTGTATCTGGTGCTCCCAGAGCCAATCACAGTGGAGCCGTGGTTTTGCTGAAGAGAGACATGAAGTCTGCACATCTCCTCCCTGAGCACATATTCGATGGAGAAGGTCTGGCCTCTTCATTTGGCTATGAT
Seq A exon
GTGGCGGTGGTGGACCTCAACAAGGATGGGTGAGAAAGCCTCAG
Seq C2 exon
GTGGCAAGATATAGTTATTGGAGCCCCACAGTATTTTGATAGAGATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091409-23-12,24-12,25-12-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0183918=FG-GAP=PU(43.3=18.3)
A:
NA
C2:
PF0183918=FG-GAP=FE(53.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTGGTTTTGCTGAAGAGA
R:
TCAAAATACTGTGGGGCTCCA
Band lengths:
135-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains