HsaINT0082512 @ hg38
Intron Retention
Gene
ENSG00000091409 | ITGA6
Description
integrin subunit alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:172491221-172491523:+
Coord C1 exon
chr2:172491221-172491331
Coord A exon
chr2:172491332-172491424
Coord C2 exon
chr2:172491425-172491523
Length
93 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
CATTCACTGTCTCCAAACAGGAA
3' ss Score
11.15
Exon sequences
Seq C1 exon
AACTGTAGCGTGAACGTGAACTGTGTGAACATCAGATGCCCGCTGCGGGGGCTGGACAGCAAGGCGTCTCTTATTTTGCGCTCGAGGTTATGGAACAGCACATTTCTAGAG
Seq A exon
GTATGACCTTGGCTTGAGGCTGTCCCATGGAAGTAATTTGCCTTTGCCTAGGACACTTTTCACTTCCCTAATGCATTCACTGTCTCCAAACAG
Seq C2 exon
GAATATTCCAAACTGAACTACTTGGACATTCTCATGCGAGCCTTCATTGATGTGACTGCTGCTGCCGAAAATATCAGGCTGCCAAATGCAGGCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091409:ENST00000264107:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=PD(2.5=32.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGAACATCAGATGCCCG
R:
GGCAGCCTGATATTTTCGGCA
Band lengths:
173-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development