HsaEX1002232 @ hg38
Exon Skipping
Gene
ENSG00000225205 | AC093818.1
Description
NA
Coordinates
chr2:172481558-172495516:-
Coord C1 exon
chr2:172495375-172495516
Coord A exon
chr2:172488539-172488649
Coord C2 exon
chr2:172481558-172481813
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGTTTATGTTTATTCAACAGGAC
3' ss Score
9.71
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
TCATTCTCCAGCTGGGATTGAGAACAAGGGGAAGCTGGCCATAGAGCCAGGTGACCAAAGATGGAAGACAAAGGGTGGGCTGTGATTCCCAGAGCTCCAAGCCTTGTTCTGTCTTGTCACACCAACTGTTACTGATGAACAG
Seq A exon
GACAGAGAGTCACTGTGATTGCCTACTTTGAAATGGTTCAGAGCCAGTCACTGCCTTTCCTACAGGCATATACCAAATCTACATTCACCACAAAAACTGGGCTTGTGAAAG
Seq C2 exon
CCACACAAAGAATTGCTTTCTACACTCGACAAAATGCCGGCTGCATCAAAAAGCAAAGCAAAAGGCCACAGCTCCCCCTGTGCACGAAGTCATAATCCATCCACTCTAAGAATGCTTCGTGCAAGGTCTGCAGGTCCCATGGAGAGACCACACAGCAGGAGACGACCCCACAGAAGGGGAGACGGAGAAACCACCTGCAGACAGCTCGAAATCTGGAAAGATGAAGGCTAACTGAGCTTATGACACTGAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000225205-'23-14,'23-13,24-14
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTCCCAGAGCTCCAAGC
R:
TTCTCCGTCTCCCCTTCTGTG
Band lengths:
250-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains