BtaINT0077904 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24146811-24147119:-
Coord C1 exon
chr2:24147009-24147119
Coord A exon
chr2:24146910-24147008
Coord C2 exon
chr2:24146811-24146909
Length
99 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGA
5' ss Score
3.51
3' ss Seq
CTCACTTTGTCTCCAAACAGGAA
3' ss Score
11.51
Exon sequences
Seq C1 exon
AACTGCAGCGTGAACGTGAACTGTGTGAACATCAAGTGCCCGCTGCGAGGGCTGGACAGCAAGGCCTCCGTGGTCCTGCGCTCGAGGTTATGGAACAGCACGTTTCTGGAG
Seq A exon
GTGTGACCCCCACCGCAGGCTGTGTCCCCCAAGCCGTCTGCCACCTGCTAGACCATTTCTCTTTTCACTCACGCTTTCACTCACTTTGTCTCCAAACAG
Seq C2 exon
GAATACTCCAAGATGAACTACTTGGACATTCTCGTGCGGGCTTCCATTGATGTCATTGCTGCCACCGAGAATATCAAGCTGCCCAACGCAGGCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266:ENSBTAT00000022960:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=PD(2.5=32.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGAACGTGAACTGTGTGA
R:
ATTCTCGGTGGCAGCAATGAC
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]