DreEX6034816 @ danRer10
Exon Skipping
Gene
ENSDARG00000042282 | itga6a
Description
integrin, alpha 6a [Source:ZFIN;Acc:ZDB-GENE-050309-23]
Coordinates
chr9:3489038-3492282:+
Coord C1 exon
chr9:3489038-3489132
Coord A exon
chr9:3491606-3491733
Coord C2 exon
chr9:3492193-3492282
Length
128 bp
Sequences
Splice sites
3' ss Seq
TATCTAACATTATCTTTCAGATA
3' ss Score
9.69
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
ATATTGCAGTAGGCGCTCCATATGCAGACTCAGGATTTGGCAGCGTGTACATCTACCACGGATCTGCTGACGGCATCAGTACCAAACCGGCTCAG
Seq A exon
ATACTGGAAGGCAAACAACACAACACTAAGATGTTTGGATATTCCCTTGCTGGAAATATGGACTTGGATCACAACTCGTACCCTGATCTGGCCGTGGGGTCACTTTCTGACACAGTTTTCATATACAG
Seq C2 exon
GTCCAAAAATGTCATCAGCATCAAGAAAGACATCAAGGTGACACCGAAGGAAATTGACTTGACGAAGAAAACATGTGGCAACAGTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042282-'7-9,'7-7,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183918=FG-GAP=PD(60.0=56.2)
A:
PF0183918=FG-GAP=PU(88.6=72.1)
C2:
PF0183918=FG-GAP=PD(8.6=9.7),PF084417=Integrin_alpha2=PU(6.2=93.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTAGGCGCTCCATATGCAG
R:
CAAATACTGTTGCCACATGTTTTCT
Band lengths:
179-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]