BtaEX6009027 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24160611-24167069:-
Coord C1 exon
chr2:24166981-24167069
Coord A exon
chr2:24166158-24166276
Coord C2 exon
chr2:24160611-24160709
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGATGCCCTATTCATTTCAGGTT
3' ss Score
8.95
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ATATTGCGGTTGGAGCACCCTATGATGGTAAGGGGAAGGTTTTTATCTATCATGGATCTGCGAATGGAATAAATACCAAACCAACACAG
Seq A exon
GTTCTTGAGGGTAAGTCACCCTTTTTTGGATATTCAATTGCTGGAAACATGGACCTTGATAGAAATTCCTACCCTGATGTTGCTGTTGGTTCTCTCTCAGATTCGGTGACTATTTTCAG
Seq C2 exon
ATCCCGGCCTGTGATTAATATTCAGCAAACCATCACAGTAACACCCAACAGAATTGATCTCCGTCAGAAAACGCTCTGTGGGGCGCCTAGTGGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266-'11-10,'11-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135171=VCBS=PD(4.1=10.0)
A:
NO
C2:
PF084417=Integrin_alpha2=PU(6.7=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGCGGTTGGAGCACCCTA
R:
ATATCCCACTAGGCGCCCC
Band lengths:
186-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]