MmuEX6102128 @ mm10
Exon Skipping
Gene
ENSMUSG00000027111 | Itga6
Description
integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
Coordinates
chr2:71826723-71833794:+
Coord C1 exon
chr2:71826723-71826811
Coord A exon
chr2:71827896-71828014
Coord C2 exon
chr2:71833696-71833794
Length
119 bp
Sequences
Splice sites
3' ss Seq
CAGTGCCCCGTGTATTCCAGGTT
3' ss Score
7.09
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
ATATTGCTGTTGGAGCTCCCTATGATGATCTGGGGAAGGTTTTTATCTATCATGGATCCCCGACTGGCATAATTACCAAGCCAACACAG
Seq A exon
GTTCTCGAGGGGACATCGCCTTACTTCGGCTATTCAATCGCTGGGAATATGGACCTGGATCGGAATTCCTACCCCGACCTTGCTGTGGGCTCCCTCTCAGACTCGGTCACTATTTTCAG
Seq C2 exon
ATCCCGGCCAGTGATTAACATTCTAAAAACCATCACAGTGACTCCTAACAGAATTGACCTCCGCCAGAAGTCCATGTGTGGCTCACCTAGCGGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027111-'26-24,'26-22,28-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135171=VCBS=PD(4.1=10.0)
A:
PF0183918=FG-GAP=WD(100=77.5)
C2:
PF084417=Integrin_alpha2=PU(6.7=94.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTGGAGCTCCCTATGATG
R:
CACATGGACTTCTGGCGGAG
Band lengths:
162-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types