DreEX6062542 @ danRer10
Exon Skipping
Gene
ENSDARG00000007219 | actn1
Description
actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]
Coordinates
chr13:36209362-36211531:-
Coord C1 exon
chr13:36211384-36211531
Coord A exon
chr13:36209640-36209790
Coord C2 exon
chr13:36209362-36209470
Length
151 bp
Sequences
Splice sites
3' ss Seq
ATCTTTGCTGCTCCCTGTAGGTA
3' ss Score
10.32
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
Exon sequences
Seq C1 exon
GACATCTCCAATTCATGGGGACGTCTGGAGGGGGCAGAGAAGGGTTATGAAGAGTGGCTGCTCAATGAGATCCGCAGACTTGAGAGACTCGATCATCTTGCTGAGAAATTCCGCCAAAAAGCTGCCATTCACGAGGCCTGGACTGACG
Seq A exon
GTAAAGAGGAGATGTTGCAGCACAAAGACTTTGAGACGGCGTCACTGTCCGAGATCAAGGCTCTGCTGAAGAAACACGAGGCCTTTGAGAGCGACCTCGCAGCTCATCAGGACAGAGTGGAGCAGATCGCTGCCATCGCTCAGGAGCTCAA
Seq C2 exon
TGAGCTGGAGTATTACGACTCTCCCAGTGTAAATGCTCGCTGTCAGCGCATCTGTGATCAGTGGGATTCGCTGGGAGTGTTAACTCAGAAACGCAGTGAGGCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007219-'15-15,'15-14,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(18.9=42.0),PF0043516=Spectrin=PU(17.0=36.0)
A:
PF0043516=Spectrin=FE(47.2=100)
C2:
PF0043516=Spectrin=FE(34.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATTCATGGGGACGTCTGG
R:
GCCTCACTGCGTTTCTGAGTT
Band lengths:
243-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]