DreEX6063721 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3117683-3120977:+
Coord C1 exon
chr18:3117683-3117804
Coord A exon
chr18:3118992-3119134
Coord C2 exon
chr18:3120864-3120977
Length
143 bp
Sequences
Splice sites
3' ss Seq
AACTTCTCTTTATCCGACAGCCT
3' ss Score
6.3
5' ss Seq
CAGGTGCAA
5' ss Score
2.83
Exon sequences
Seq C1 exon
TGGTGAATCTGGTGCTGGAAAGACAGAAAGCACCAAACTGATCCTGCAGTTTCTGGCAGCCATCAGCGGGCAGCACTCCTGGATCGAGCAGCAGGTGCTGGAGGCAAATCCCATCCTGGAAG
Seq A exon
CCTTTGGAAATGCTAAAACCATCCGAAACGACAACTCAAGCCGCTTTGGGAAGTACATCGACATCCACTTCAACAAAAGAGGAGCCATAGAGGGAGCAAAGATCGAACAGTACCTTCTGGAGAAATCCAGAGTGTGTCGACAG
Seq C2 exon
GCCCGTGATGAGAGAAACTACCACATTTTCTACTGTATGCTGAAGGGAATGACTCCAGACCAGAAGAAGCAGCTGGGTTTGAGTAAAGCCACAGACTACACTTACCTCACTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.2=100)
A:
PF0006316=Myosin_head=FE(7.1=100)
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAATCTGGTGCTGGAAA
R:
TAGTGAGGTAAGTGTAGTCTGTGGC
Band lengths:
234-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]