RnoEX6003819 @ rn6
Exon Skipping
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163048694-163049327:-
Coord C1 exon
chr1:163049206-163049327
Coord A exon
chr1:163048983-163049125
Coord C2 exon
chr1:163048694-163048807
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGTTCCCTACCACCCTGCAGCAT
3' ss Score
6.8
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CGGGGAATCAGGAGCTGGCAAGACAGAGAGCACAAAGCTGATCCTGCAGTTCCTGGCGGCTATCAGTGGACAGCACTCATGGATCGAGCAGCAGGTGCTGGAGGCCACCCCGATCCTGGAAG
Seq A exon
CATTTGGGAATGCCAAGACCATCCGCAATGACAACTCCAGCCGCTTTGGCAAGTACATTGACATCCACTTTAACAAGCGTGGTGCCATTGAGGGCGCAAAAATAGAGCAGTACCTGCTGGAGAAGTCACGAGTCTGCCGCCAG
Seq C2 exon
GCCCCTGATGAGAGGAACTATCACGTGTTCTACTGTATGCTGGAGGGCATGAATGAGGAGGAGAAGAAGAAGCTAGGCCTAGGCCAGGCCGCTGACTACAACTATTTGGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.2=100)
A:
PF0006316=Myosin_head=FE(7.1=100)
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATCAGGAGCTGGCAAGA
R:
CATTGCCAAATAGTTGTAGTCAGCG
Band lengths:
234-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]