DreEX6084403 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22215879-22218439:+
Coord C1 exon
chr21:22215879-22216000
Coord A exon
chr21:22218103-22218245
Coord C2 exon
chr21:22218326-22218439
Length
143 bp
Sequences
Splice sites
3' ss Seq
AGTTTTTCTTGTTTCCACAGCAT
3' ss Score
8.72
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CGGTGAGTCTGGAGCTGGAAAGACGGAGAGCACCAAGCTCATCCTGCAGTTCCTGGCAGCTATAAGTGGCCAACACTCCTGGATTGAGCAGCAGGTTCTGGAGGCCAACCCGATTTTGGAAG
Seq A exon
CATTTGGTAATGCCAAGACAATACGCAATGACAACTCAAGCCGGTTTGGAAAATATGTTGATATTCACTTCAACAAGCGAGGAGCTATTGAGGGGGCAAAGATCGAGCAGTACCTGCTGGAGAAATCAAGAGTTTGCAGACAG
Seq C2 exon
GCAGCGGATGAGAGGAACTATCATATATTCTATTGTATGCTGGCAGGCATGAGCCCGGATCAGAAGACTAAATTAGGTCTGGGCCGGGCCACAGACTACACTTATCTTACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.1=100)
A:
PF0006316=Myosin_head=FE(7.2=100)
C2:
PF0006316=Myosin_head=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGAGTCTGGAGCTGGAAA
R:
TAGTAAGATAAGTGTAGTCTGTGGCC
Band lengths:
234-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]