DreEX6064102 @ danRer10
Exon Skipping
Gene
ENSDARG00000078508 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr18:6965783-6966306:-
Coord C1 exon
chr18:6966213-6966306
Coord A exon
chr18:6965946-6966119
Coord C2 exon
chr18:6965783-6965865
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCTCTCTCTCAGGCT
3' ss Score
12.25
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCTGGTGAGGTGAAGTGTGTGTCTCCTCGTTGTAAGACACTGTCCTGTGTGCATCAGCTTACTGATCCCGGCTCCTGCTGTCCCCGATGCAGAG
Seq A exon
GCTGTATTTATGATGGTGTGGAGCGTCAGGAAGGCAGTACCTGGTTTGCGTCCGCTGGTCTCTGCATGTCCTGCATGTGTGTGGACGGAGTGACCACCTGTTCAGAGGTGCACTGTCTGTCCACCTGCATCAACCAGATCACTGTACCCGGAGAGTGCTGTCCAGTGTGCGCAG
Seq C2 exon
ACTGTGTGTTTGAAGGCAGAGTTTATGGCCCTGGAGAGAGTTTCCAGCCATCTGAAGATCCCTGTCAGATCTGCACCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078508-'39-37,'39-36,40-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(50.9=90.6)
A:
PF0009313=VWC=WD(100=94.9)
C2:
PF0009313=VWC=PU(39.4=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGAGGTGAAGTGTGTG
R:
CACAGGTGCAGATCTGACAGG
Band lengths:
175-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]