DreEX6064103 @ danRer10
Exon Skipping
Gene
ENSDARG00000078508 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr18:6963678-6966119:-
Coord C1 exon
chr18:6965946-6966119
Coord A exon
chr18:6965783-6965865
Coord C2 exon
chr18:6963678-6963798
Length
83 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTTTTCTGTTAGACT
3' ss Score
7.42
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
GCTGTATTTATGATGGTGTGGAGCGTCAGGAAGGCAGTACCTGGTTTGCGTCCGCTGGTCTCTGCATGTCCTGCATGTGTGTGGACGGAGTGACCACCTGTTCAGAGGTGCACTGTCTGTCCACCTGCATCAACCAGATCACTGTACCCGGAGAGTGCTGTCCAGTGTGCGCAG
Seq A exon
ACTGTGTGTTTGAAGGCAGAGTTTATGGCCCTGGAGAGAGTTTCCAGCCATCTGAAGATCCCTGTCAGATCTGCACCTGTGAG
Seq C2 exon
GTGATGCCGGATGGAGAGCAGCACTTGCGCTGTTACAGAAAGCAGTGTCCGAGTTTGGTGGACTGTCCTAAACACAACATCCTGCACAGCAGCTCTGATTCCTGCTGTCCTGTCTGCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078508-'40-39,'40-37,41-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=WD(100=94.9)
A:
PF0009313=VWC=PU(39.4=92.9)
C2:
PF0009313=VWC=PD(57.6=92.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTCTGTCCACCTGCATC
R:
GCAGACAGGACAGCAGGAATC
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]