RnoEX6012968 @ rn6
Exon Skipping
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56768007-56768891:-
Coord C1 exon
chr4:56768718-56768891
Coord A exon
chr4:56768378-56768460
Coord C2 exon
chr4:56768007-56768127
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTGTCTTACCTCAAGGCT
3' ss Score
6.64
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GCTGCCGCGTTCGTGGGGAGGAGCATCCTGAAGGTAGTAGCTGGGTGCCGGCGGACAGCCCCTGTTCTTCCTGCATGTGTCACAAGGGCATTGTCACTTGTGCCCAAGTCCAGTGTGTCAGCGCCTGCATCTGGCCCCAGCAGGGGCCCAGTGACTGCTGCCCTTCATGCTCTG
Seq A exon
GCTGTGAGCATGAGGGCAGAAAGTACGAACCCGGGGAGAGCTTCCAACCTGGGGACGACCCATGTGAAGTGTGCATCTGCGAG
Seq C2 exon
CTGAAGGGCAAGGGGCCTCCCAGCCTGCACTGTCGCCGGCGCCAGTGCCCCAGTCTGGTGGGCTGCCCACCAAGCCAGCTACTTCCTCCTGGCCCCCAGCACTGCTGCCCTGCCTGTGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855-'35-37,'35-36,36-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=WD(100=94.9)
A:
PF0009313=VWC=PU(39.4=92.9)
C2:
PF0009313=VWC=PD(57.6=92.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGCATTGTCACTTGTGC
R:
GAGGAAGTAGCTGGCTTGGTG
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]