HsaEX7004437 @ hg38
Exon Skipping
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128884002-128885270:-
Coord C1 exon
chr7:128885097-128885270
Coord A exon
chr7:128884781-128884863
Coord C2 exon
chr7:128884002-128884122
Length
83 bp
Sequences
Splice sites
3' ss Seq
GCTCTCACTCCACCCCAAAGACT
3' ss Score
2.5
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCTGCCTGGCTCATGGGGAAGAGCACCCCGAAGGCAGTAGATGGGTGCCCCCCGACAGTGCCTGCTCCTCCTGTGTGTGTCACGAGGGCGTCGTCACCTGTGCACGCATCCAGTGCATCAGCTCTTGCGCCCAGCCCCGCCAAGGGCCCCATGACTGCTGTCCTCAATGCTCTG
Seq A exon
ACTGTGAGCATGAGGGCCGGAAGTACGAGCCTGGGGAGAGCTTCCAGCCTGGGGCAGACCCCTGTGAAGTGTGCATCTGCGAG
Seq C2 exon
CCACAGCCTGAGGGGCCTCCCAGCCTTCGCTGTCACCGGCGGCAGTGTCCCAGCCTGGTGGGCTGCCCCCCCAGCCAGCTCCTGCCCCCTGGGCCCCAGCACTGCTGTCCCACCTGTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253-'41-44,'41-43,42-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=WD(100=94.9)
A:
PF0009313=VWC=PU(39.4=92.9)
C2:
PF0009313=VWC=PD(57.6=92.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCCTCCTGTGTGTGTCA
R:
CCACCAGGCTGGGACACT
Band lengths:
174-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains