DreEX0005342 @ danRer10
Exon Skipping
Gene
ENSDARG00000078508 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr18:6958659-6961099:-
Coord C1 exon
chr18:6961000-6961099
Coord A exon
chr18:6960326-6960414
Coord C2 exon
chr18:6958659-6958928
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGTAGATGTGTTTTTTTCAGTGT
3' ss Score
7.55
5' ss Seq
AATGTAAGG
5' ss Score
6.17
Exon sequences
Seq C1 exon
GATTTGACATGGACGTGTGTTCACCGTGGTTGTCCTCCTCTGAGCTGCTCTCCATCTGACCAGCACACTCCTCCTGACTCCTGCTGCCCCATCTGTGATG
Seq A exon
TGTGTGTATTAGAGGGCAGCAACACCCGTGTGCCAGATGGCCATAGATGGACAGACAAGGAGAATGAGTGCACAACCTGCATCTGTAAT
Seq C2 exon
AAAGGGCACATTGAGTGTGACCTGCAGGAGTGTGCTCCGCTCCAGTGTCCGGATGGATCCGTTAAAGTCAAGAACCCGGGGAAGTGCTGTCAAGAGTGCACAGAGGTGGTAGATGTGGTGTACATATACCCTAGTGCAGAGTGTGTGTACGAGGGACAGATATATAGAGACAGTGACCAATGGGAAGTGGACGAGTGTACGACCTGCACCTGTGTGAATGGAGATGTGCACTGCCAAACCCAGAGATGCCCAACGCTCACATGTGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078508-'45-43,'45-42,46-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(58.5=91.2)
A:
PF0009313=VWC=PU(45.2=93.3)
C2:
PF0009313=VWC=PD(51.6=35.6),PF0009313=VWC=PU(72.4=46.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTGAGCTGCTCTCCATC
R:
CCACCTCTGTGCACTCTTGAC
Band lengths:
174-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]