BtaEX6028521 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93658956-93660054:-
Coord C1 exon
chr4:93659955-93660054
Coord A exon
chr4:93659357-93659445
Coord C2 exon
chr4:93658956-93659058
Length
89 bp
Sequences
Splice sites
3' ss Seq
CCCCATTTCTTTGTCCTCAGACT
3' ss Score
9.61
5' ss Seq
CGTGTGAGC
5' ss Score
4
Exon sequences
Seq C1 exon
GACCTGACTTGGCTCTGCATTCACCGGGCCTGTCCTGAGCTCAGCTGTCCCCTGCCTGAACGCTACATACCCCCTGGGAGCTGCTGCCCCATGTGCCAGG
Seq A exon
ACTGTGTGGTGGAGGCTGCGGGCCGGACAGCGGCGGATGGAGAGAGCTGGAGGGACCCCAGCAACGCCTGTGTCACGTGCACCTGCCGT
Seq C2 exon
CGGGGCCATGTGGAGTGCCGCCTGGAGGAGTGCCAGGCGCTCACCTGCCCTCGCGGCTGGGCGAAGGTGCGGGAGGCTGGCAGGTGCTGTGAGAGGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449-'46-52,'46-51,47-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(59.6=91.2)
A:
PF0009313=VWC=PU(45.2=93.3)
C2:
PF0009313=VWC=PD(51.6=91.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCTGAGCTCAGCTGTCC
R:
CTTGGCACCTCTCACAGCAC
Band lengths:
174-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]