HsaEX0033143 @ hg38
Exon Skipping
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128879718-128882016:-
Coord C1 exon
chr7:128881937-128882016
Coord A exon
chr7:128880997-128881085
Coord C2 exon
chr7:128879718-128879829
Length
89 bp
Sequences
Splice sites
3' ss Seq
TCCCATGTCTCCCCCCTCAGAAT
3' ss Score
10.26
5' ss Seq
CATGTGAGC
5' ss Score
5.03
Exon sequences
Seq C1 exon
AGGCCTTGAGTAACTGTTCAGAGGGCCTGCTGGGATCTGAGCTAGCCCCACCAGACCCCTGCTACACGTGCCAGTGCCAG
Seq A exon
AATGTGTGGTGGAGGCCGAGGGCCGGAGAGTGGCAGATGGAGAGAGCTGGCGGGACCCCAGCAATGCGTGCATCGCCTGCACCTGCCAT
Seq C2 exon
TGTGCACGTGACCAATGATGACCGGGGCCGGAGCGGTGTGGCCTGGACCCAGGAGGTGGCGGTGCTGCTGGGAGACATGGCCGTGCGGCTGCTGCAGGACGGGGCAGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253_MULTIEX4-2/6=C1-6
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(31.2=55.6)
A:
PF0009313=VWC=PU(45.2=93.3)
C2:
PF0009420=VWD=FE(24.7=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAACTGTTCAGAGGGCCTGC
R:
CGTGACTGCCCCGTCCTG
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development