DreEX6064105 @ danRer10
Exon Skipping
Gene
ENSDARG00000078508 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr18:6961000-6963798:-
Coord C1 exon
chr18:6963678-6963798
Coord A exon
chr18:6961183-6961265
Coord C2 exon
chr18:6961000-6961099
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTTATTGGTGTGTGTTTCAGAGC
3' ss Score
9.91
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GTGATGCCGGATGGAGAGCAGCACTTGCGCTGTTACAGAAAGCAGTGTCCGAGTTTGGTGGACTGTCCTAAACACAACATCCTGCACAGCAGCTCTGATTCCTGCTGTCCTGTCTGCACAC
Seq A exon
AGCCCCTCAGTAACTGCACAGCGACTCTGATTGGTAATGAAGTGTTGGCCACTGACGACCCGTGTTTTACCTGCCAGTGCAAG
Seq C2 exon
GATTTGACATGGACGTGTGTTCACCGTGGTTGTCCTCCTCTGAGCTGCTCTCCATCTGACCAGCACACTCCTCCTGACTCCTGCTGCCCCATCTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078508-'42-41,'42-40,44-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(57.6=92.7)
A:
PF0009313=VWC=PU(37.7=71.4)
C2:
PF0009313=VWC=PD(58.5=91.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCTGTTACAGAAAGCAGT
R:
GGAGGAGTGTGCTGGTCAGAT
Band lengths:
170-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]