MmuEX6003384 @ mm9
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29437181-29439150:-
Coord C1 exon
chr6:29439033-29439150
Coord A exon
chr6:29437497-29437576
Coord C2 exon
chr6:29437181-29437280
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTGGGTTCTCACTTTCTCAGAGG
3' ss Score
7.59
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AAGCGTGAGGGGCCTCCCAGCCTTCACTGTAGTCGGCGGCAGTGCCCCAGCCTGGTGGGCTGCCCACCAAGCCAGCTTCTTCCTCCTGGCCCCCAGCACTGCTGTCCCACCTGTGCCC
Seq A exon
AGGCACTGAGTAACTGCACAGAGGACCTGGTGGGGTCTGAGCTGGTGCCACCAGACCCCTGCTACACCTGTCAGTGTCAG
Seq C2 exon
GATCTGACGTGGCTCTGTACTCACCGGGCCTGTCCTGAGCTCAGCTGTCCCCTGTGGGAGCGTCACACAACCCCTGGCAGCTGCTGCCCCGTGTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-'32-39,'32-38,34-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(57.6=92.7)
A:
PF0009313=VWC=PU(34.0=63.0)
C2:
PF0009313=VWC=PD(62.0=91.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCAGCCTTCACTGTAGT
R:
GTTGTGTGACGCTCCCACAG
Band lengths:
177-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: