DreEX6064363 @ danRer10
Exon Skipping
Gene
ENSDARG00000042213 | si:ch211-233h19.2
Description
si:ch211-233h19.2 [Source:ZFIN;Acc:ZDB-GENE-061009-14]
Coordinates
chr18:8979631-8985012:+
Coord C1 exon
chr18:8979631-8979768
Coord A exon
chr18:8982333-8982596
Coord C2 exon
chr18:8984839-8985012
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTGTTCCTTATATCCATAAGGTG
3' ss Score
3.86
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GATGTAAACAAAAGAATCACGAATGTGGTCGAATCATGGGAAGGGAGTAAAGCCAAGCAAAGTTACACGCACATCATGACTGAAAACACTTCGGCTTCCTTCACCTGGGCTTTCCAGCGAACCAGTCAGGCCAGTGAT
Seq A exon
GTGCGTCAGTATGCAAATGACGTTGTGAAGATTTACTCCATAACTGTGAGCAATGCTATGGATGGAGTGGCGTCTGCATGTCGGGCCTGTGCCCTGCAGTCTCAGCAGGCTGGTTCCTCCTGTGTGCCATGCCCAGCTGGACACTACATTGATAAAGAGACCAACCAGTGCCACGAGTGCCCTCCTAATACCGTCCTTTCTGGGCACCACATTTATGGCAAAGAAATGTGCCAGCCGTGTGGGCCTGGAAGCAAAAGCAATAAG
Seq C2 exon
GAGCACAGCGTGTGTTTCAATGACTGCTCGTTCACACACACTGACCACAATCAGACCCTTCAGTTTGACTTCAGCGCTCTGGCATCTGCTGGCTTCATCATGAACGGGCCCAGTTTCACTGCCAAAGGCACAAAATACTACCACCTCTTTAATATCAGCCTGTGTGGAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042213-'12-18,'12-17,13-18=AN
Average complexity
A_S
Mappability confidence:
62%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=WD(100=51.1),PF076998=GCC2_GCC3=PU(80.4=46.6)
C2:
PF076998=GCC2_GCC3=PD(15.7=13.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAATGTGGTCGAATCATGGG
R:
TCAGCTCCACACAGGCTGATA
Band lengths:
293-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]