GgaEX1031822 @ galGal4
Exon Skipping
Gene
ENSGALG00000006606 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr1:7499941-7502068:+
Coord C1 exon
chr1:7499941-7500078
Coord A exon
chr1:7500866-7501129
Coord C2 exon
chr1:7501895-7502068
Length
264 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGGGTCTCGTTCTAGAGC
3' ss Score
9.05
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GATATTAATCGAAAAAATACTAATGTGGTGGAGTCATGGGAAAGAAGTAAAGAGAAGCAATCCTACACTCATATAATCTCCAAAAACGCTTCCTTCACCTTTACTTGGGCCTTTCAGAGAATAAATGAGGGCCAAGAT
Seq A exon
AGCAGGCAGTTCATCAATGATGTGGCAAAGATCTACTCCATCACAGTGACTAACGCGGTGGATGGAGTCGCCTCCTCTTGCCGGGCCTGCGCTCTGGGCTCTGAGCAGTCCGGCTCATCCTGTGTGCCCTGCCCAGTGGGACACTACATTGAGAAGGAGACCAGCCAGTGCAAGGAGTGTCCAGCCAACACCTTCCTGTCCATCCACCAGGTCTATGGCAAGGAGGCCTGCATTCCATGTGGGCCTGGCAGCAAGAGCACCAAG
Seq C2 exon
GACCACTCCGCCTGCTTCAGTGACTGCTTGGTGTCATACATCAAGGATAACCAGACCCTGAGTTATGATTTTAGCAACCTCAGCCAGGTGGGCTCCTTAATGAGTGGGCCGAGCTTCACTTCCCGTGGGACCAAGTTCTTCCACTTCTTTAACATCAGCCTGTGTGGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606-'19-22,'19-18,20-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF076998=GCC2_GCC3=PU(80.4=46.6)
C2:
PF076998=GCC2_GCC3=PD(15.7=13.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAATGTGGTGGAGTCATGGGA
R:
TCATTTCCACACAGGCTGATGT
Band lengths:
293-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]