DreEX6067718 @ danRer10
Exon Skipping
Gene
ENSDARG00000073771 | tbc1d12b
Description
TBC1 domain family, member 12b [Source:ZFIN;Acc:ZDB-GENE-121214-108]
Coordinates
chr12:5392367-5396651:-
Coord C1 exon
chr12:5396523-5396651
Coord A exon
chr12:5396176-5396285
Coord C2 exon
chr12:5392367-5392625
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTCTTTCTTATTCAGATG
3' ss Score
11.83
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTTCAGGGCATGTCCTTCATTGCTGCTGTGTTGATTCTCAATCTGGAGGAGGCCGATGCTTTCATCGCCTTCGCCAATCTCCTCAACAAACCCTGTCAGATGGCTTTCTTCAGAGTGGACCACGAGCTG
Seq A exon
ATGCTGAAGTACTTTGCAGCGTTTGAGGTGTTTTTTGAGGAAAACCTGCCCAGACTGTTTAATCACTTCAAGAGTTACAACCTCACGCCTGACCTGTATCTGATAGACTG
Seq C2 exon
GATCTTCACGCTGTACGCTAAGTCTCTGCCGCTGGATGTGGCGTGTCGGGTGTGGGACGTCTTCTGCAGGGACGGAGAGGAGTTTTTGTTCAGGACAGGGCTGGGTATCCTGCGGCTCTACGAGGAACTGCTTCTGCAGATGGATTTCATTCACAGTGCTCAGTTTCTGACCCGTCTGCCGGACGACACGCCGCCTGAACGCCTCTTCAGCTGCATCGCCAGCACGCAGATGATCAGCAGCAACAGGAAGTGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073771-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(18.7=100)
A:
PF0056613=RabGAP-TBC=FE(16.0=100)
C2:
PF0056613=RabGAP-TBC=PD(20.0=51.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATCGCCTTCGCCAATCTC
R:
GCAGACGGGTCAGAAACTGAG
Band lengths:
248-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]