MmuEX0046393 @ mm9
Exon Skipping
Gene
ENSMUSG00000048720 | Tbc1d12
Description
TBC1D12: TBC1 domain family, member 12 [Source:MGI Symbol;Acc:MGI:2384803]
Coordinates
chr19:38988419-38991360:+
Coord C1 exon
chr19:38988419-38988547
Coord A exon
chr19:38988794-38988903
Coord C2 exon
chr19:38991102-38991360
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTATCTTTTTCTATGTATAGATG
3' ss Score
7.77
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTCCAGGGGATGTCCTTCATCGCAGCCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTGCCAACTGGCCTTTTTCCGAGTGGATCACAGCATG
Seq A exon
ATGTTGAAGTATTTTGCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATTTGATAGATTG
Seq C2 exon
GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048720-'15-15,'15-14,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(18.6=100)
A:
PF0056613=RabGAP-TBC=FE(15.9=100)
C2:
PF0056613=RabGAP-TBC=PD(19.9=51.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGGCCTTTTTCCGAGTGG
R:
GCGATGCAGCTGAAAAGCTTT
Band lengths:
251-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: