BtaEX0035689 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009693 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr26:15846083-15849037:+
Coord C1 exon
chr26:15846083-15846211
Coord A exon
chr26:15846470-15846579
Coord C2 exon
chr26:15848779-15849037
Length
110 bp
Sequences
Splice sites
3' ss Seq
GTTGAAATTTCTATCTTTAGATG
3' ss Score
6.41
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTCCAAGGGATGTCCTTCATAGCAGCAGTTCTCATTCTCAACTTGGAAGAAGCAGATGCCTTCATTGCATTTGCAAATCTCCTGAATAAGCCATGCCAGTTAGCCTTTTTTCGTGTGGATCACAGCATG
Seq A exon
ATGTTGAAATATTTTGCAACGTTTGAAGTATTTTTTGAAGAAAATCTCTCCAAACTATTTCTTCATTTCAAATCTTATAGTCTTACACCAGACATATACTTGATAGACTG
Seq C2 exon
GATCTTCACACTCTATAGCAAATCACTACCACTTGATCTGGCCTGTCGAGTATGGGATGTATTTTGCAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGAATCCTCCGATTATATGAAGATATTCTTCTACAGATGGACTTTATTCACATAGCACAGTTTCTAACTAAATTGCCAGAAGATATCACATCAGAAAAACTGTTCAGCTGTATTGCAGCCATTCAGATGCAGAATAGTACCAAAAAATGGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009693_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(18.6=100)
A:
PF0056613=RabGAP-TBC=FE(15.9=100)
C2:
PF0056613=RabGAP-TBC=PD(19.9=51.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCGTGTGGATCACAGCATG
R:
TCTGCATCTGAATGGCTGCAA
Band lengths:
257-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development