DreEX6054117 @ danRer10
Exon Skipping
Gene
ENSDARG00000038237 | tbc1d12a
Description
TBC1 domain family, member 12a [Source:ZFIN;Acc:ZDB-GENE-030131-3920]
Coordinates
chr17:23217431-23218893:-
Coord C1 exon
chr17:23218765-23218893
Coord A exon
chr17:23218358-23218467
Coord C2 exon
chr17:23217431-23217689
Length
110 bp
Sequences
Splice sites
3' ss Seq
TACTTTGTTTTCCTCCAAAGATG
3' ss Score
8.21
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
GTTCAGGGGATGTCCTTCATTGCTGCTGTTCTCATTCTGAATTTGGAGGAAGCCGATGCCTTCATTGCCTTTGCCAACCTTCTCAACAAACCATGCCAGATGGCCTTCTTCAGAGTGGACCATGACCTG
Seq A exon
ATGCTGAAGTATTTTGCAGCGTTTGAGGTGTTTTTTGAGGAGAACCTTCCCAGACTTTTCCAGCACTTTCAGAACAACAGCTTGACGCCTGACTTTTACCTCATAGACTG
Seq C2 exon
GATCTTCACTCTGTACAGTAAGTCTTTACCGCTAGACGTGGCGTGTCGTGTTTGGGATGTGTTTTGTCGAGACGGAGAGGAGGCGTTATTCCGGACGGGATTGGGGATCCTGCGGTTGTACCAGGATGTTTTGCTGCAGATGGATTTCATTCATAGTGCGCAGTTTCTTTCCCGGTTGCCTGAAAACACTCCTGCACACACACTCTTCTCCTGCATCGCAAACACACAGATGATCAGCAACAACCGCCGCTGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038237-'11-15,'11-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(18.4=100)
A:
PF0056613=RabGAP-TBC=FE(15.8=100)
C2:
PF0056613=RabGAP-TBC=PD(19.7=51.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGCCTTCATTGCCTTTGC
R:
AGGCAACCGGGAAAGAAACTG
Band lengths:
257-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]