BtaINT0145397 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009693 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr26:15846083-15846579:+
Coord C1 exon
chr26:15846083-15846211
Coord A exon
chr26:15846212-15846469
Coord C2 exon
chr26:15846470-15846579
Length
258 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGA
5' ss Score
6.56
3' ss Seq
GTTGAAATTTCTATCTTTAGATG
3' ss Score
6.41
Exon sequences
Seq C1 exon
GTCCAAGGGATGTCCTTCATAGCAGCAGTTCTCATTCTCAACTTGGAAGAAGCAGATGCCTTCATTGCATTTGCAAATCTCCTGAATAAGCCATGCCAGTTAGCCTTTTTTCGTGTGGATCACAGCATG
Seq A exon
GTATGAACATTTAGAATGAATTGTTTTTCTTTGTCAGTTTCTATAGTCTGATTGCCCTTACAGAGTAAAATACAGTAATCAGAAGACCAAGGTGATCTAAAATAAGCCTTTCATTGAATTACAGTTTTATGAATGCTTGATGAAAACACTCAGAAAGAGGTGCTAAGCAAGATTTTCTATTAACTTATGAGTAAGGATTTAATTTCTCAATTTCTCGAGTATACTCTTAAATAATTTTGTTGAAATTTCTATCTTTAG
Seq C2 exon
ATGTTGAAATATTTTGCAACGTTTGAAGTATTTTTTGAAGAAAATCTCTCCAAACTATTTCTTCATTTCAAATCTTATAGTCTTACACCAGACATATACTTGATAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009693:ENSBTAT00000012783:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(18.6=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGTCCTTCATAGCAGCA
R:
CAGTCTATCAAGTATATGTCTGGTGT
Band lengths:
233-491
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]