MmuINT0157245 @ mm9
Intron Retention
Gene
ENSMUSG00000048720 | Tbc1d12
Description
TBC1D12: TBC1 domain family, member 12 [Source:MGI Symbol;Acc:MGI:2384803]
Coordinates
chr19:38988419-38988903:+
Coord C1 exon
chr19:38988419-38988547
Coord A exon
chr19:38988548-38988793
Coord C2 exon
chr19:38988794-38988903
Length
246 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGA
5' ss Score
6.56
3' ss Seq
TTATCTTTTTCTATGTATAGATG
3' ss Score
7.77
Exon sequences
Seq C1 exon
GTCCAGGGGATGTCCTTCATCGCAGCCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTGCCAACTGGCCTTTTTCCGAGTGGATCACAGCATG
Seq A exon
GTATGAACATTTGGGATAGACTGTGTTTTCCTCATAAGTTTCTGTATTCTGAATGCCTGCTTAGAATAAAAAACATGAAGAAACTGAAGTAATCTAAGCAAATAGACAAAATTTTCATTGAATAACAATTTTAGAAAACTTGAAGCAACTCAAAAGAGTTGTTAATAAAATTTTCTATTAATATTAACACTTTCTCTTTCTGCCATAGATTATTTTGTAATTTTATTTATCTTTTTCTATGTATAG
Seq C2 exon
ATGTTGAAGTATTTTGCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATTTGATAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048720-Tbc1d12:NM_145952:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(18.6=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGGGGATGTCCTTCAT
R:
TCTGGTGTCAGATTATACGACTTGA
Band lengths:
221-467
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: