DreEX6071229 @ danRer10
Exon Skipping
Gene
ENSDARG00000002748 | sema6d
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:ZFIN;Acc:ZDB-GENE-040426-1933]
Coordinates
chr19:414488-414973:+
Coord C1 exon
chr19:414488-414565
Coord A exon
chr19:414690-414748
Coord C2 exon
chr19:414920-414973
Length
59 bp
Sequences
Splice sites
3' ss Seq
GCGCATGTGCGTGTGTGCAGGGC
3' ss Score
6.5
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACGCTGCCTCTACACACATGACCCATACTGCATCTGGCTGCGGACGGGACGCTGTGCTGACATGGCCCCGGGGTTCAA
Seq A exon
GGCGGGATTTGAACAGGACATTGATGGTGAACAAACTCATTTATTTGACACATGCACTG
Seq C2 exon
ATGTGATGTCATCAGCAGGAAGTGATGTCAAATCAGCTGTGGATTCGGCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002748-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(47.3=100)
A:
PF0143720=PSI=PD(34.5=90.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTGCCTCTACACACATGA
R:
CAGAGGCCGAATCCACAGC
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]