DreEX6071230 @ danRer10
Exon Skipping
Gene
ENSDARG00000002748 | sema6d
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:ZFIN;Acc:ZDB-GENE-040426-1933]
Coordinates
chr19:413066-414748:+
Coord C1 exon
chr19:413066-413194
Coord A exon
chr19:414488-414565
Coord C2 exon
chr19:414690-414748
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTGAGTGTGTTTCTCCACAGACG
3' ss Score
10.01
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTGTGTTGGTGAGCGTGCAGTGTTGGGTCTGGAGCTGGATAAGGAGCATCACGCTCTGTTTGTGGCCTTCTCCAGCTGTGTGATCAGAGTTCCTCTCAGCCGCTGCGCTCAGCACGCCACCTGCAGGAG
Seq A exon
ACGCTGCCTCTACACACATGACCCATACTGCATCTGGCTGCGGACGGGACGCTGTGCTGACATGGCCCCGGGGTTCAA
Seq C2 exon
GGCGGGATTTGAACAGGACATTGATGGTGAACAAACTCATTTATTTGACACATGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002748-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PD(1.9=18.2),PF0143720=PSI=PU(16.4=20.5)
A:
PF0143720=PSI=FE(47.3=100)
C2:
PF0143720=PSI=PD(34.5=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTGGTGAGCGTGCAG
R:
TGAGTTTGTTCACCATCAATGTCCT
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]