Special

ENSG00000143434 @ hg38

Biotype
protein_coding
Gene Symbol
SEMA6C
Description
semaphorin 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr1:151131685-151146664:-
Assembly
hg38
Other assemblies
hg19

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
-
18.68
46.91
0
Alternative 5'ss
23
chr1:151137986-151138008
-
81.32
46.91
0
Exon Skipping
96
chr1:151133960-151134055
-
4.8
73.03
0
Exon Skipping
132
chr1:151136448-151136579
-
96.44
22.1
0
Exon Skipping
172
chr1:151142504-151142675
-
92.43
99.53
0
Exon Skipping
261
chr1:151145024-151145284
-
12.23
39.04
0
Exon Skipping
174
chr1:151135591-151135764
-
96.81
76.47
0
Exon Skipping
102
chr1:151138630-151138731
-
96.83
24.62
0
Exon Skipping
91
chr1:151138316-151138406
-
92.9
27.27
0
Exon Skipping
120
chr1:151137986-151138105
-
90.5
40.05
0
Intron Retention
1998
chr1:151144435-151146432
-
31.45
78.62
0
Intron Retention
246
chr1:151135765-151136010
-
2.49
100
0
Intron Retention
281
chr1:151135310-151135590
-
3.01
100
0
Intron Retention
883
chr1:151133518-151134400
-
10.73
25
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000038777 Sema6c 1-to-1
Mouse mm9 ENSMUSG00000038777 Sema6c 1-to-1
Rat rn6 ENSRNOG00000021101 Sema6c 1-to-1
Cow bosTau6 ENSBTAG00000007281 SEMA6C 1-to-1
Chicken galGal4 ENSGALG00000027651 SEMA6C 1-to-1
Zebrafish danRer10 ENSDARG00000000189 sema6e 1-to-2
Zebrafish danRer10 ENSDARG00000002748 sema6d 1-to-2
Fruitfly dm6 FBgn0011259 Sema-1a 4-to-2
Fruitfly dm6 FBgn0016059 Sema-1b 4-to-2
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