HsaEX0057161 @ hg38
Exon Skipping
Gene
ENSG00000143434 | SEMA6C
Description
semaphorin 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr1:151136011-151137074:-
Coord C1 exon
chr1:151136857-151137074
Coord A exon
chr1:151136448-151136579
Coord C2 exon
chr1:151136011-151136163
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTCTGGCTCCTCCAGCAT
3' ss Score
8.14
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGCAGTTCTCCCGCGTAGCCCGAGTATGTAAACGTGACATGGGCGGCTCGCCTCGGGCCTTGGACCGCCACTGGACATCCTTCCTGAAGCTTCGGCTCAACTGCTCTGTCCCTGGGGACTCTACTTTCTATTTTGATGTTTTACAGGCCTTGACTGGGCCTGTGAACCTGCATGGCCGCTCTGCTCTCTTTGGGGTCTTCACCACCCAGACCAATAG
Seq A exon
CATCCCTGGCTCTGCCGTCTGCGCCTTCTACCTGGATGAGATTGAGCGTGGGTTTGAGGGCAAGTTCAAGGAGCAGAGGAGTCTGGATGGGGCCTGGACTCCTGTGTCTGAGGACAGAGTTCCCTCACCCAG
Seq C2 exon
GCCAGGATCCTGTGCAGGAGTAGGGGGAGCTGCCTTGTTCTCCTCTTCCCGAGACCTCCCTGATGATGTCCTGACCTTCATCAAGGCTCACCCGCTGCTGGACCCCGCTGTACCACCTGTCACCCATCAGCCTCTACTCACTCTCACTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143434-'31-26,'31-25,32-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.292 C2=0.064
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.0=100)
A:
PF0140314=Sema=FE(10.4=100)
C2:
PF0140314=Sema=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTAAACGTGACATGGGCGG
R:
GGTCTCGGGAAGAGGAGAACA
Band lengths:
248-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development