RnoEX6010552 @ rn6
Exon Skipping
Gene
ENSRNOG00000021101 | Sema6c
Description
semaphorin 6C [Source:RGD Symbol;Acc:3659]
Coordinates
chr2:196339508-196340526:+
Coord C1 exon
chr2:196339508-196339725
Coord A exon
chr2:196339982-196340113
Coord C2 exon
chr2:196340374-196340526
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTCTGGCCCCCTCAGCAT
3' ss Score
6.7
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTGCAGTTTTCCCGGGTGGCCCGGGTGTGTAAACGTGACATGGGTGGCTCACCACGGGCCTTGGATCGCCACTGGACATCCTTCCTTAAGCTGAGGCTCAACTGCTCCGTCCCTGGGGACTCTACCTTCTACTTTGATGTCTTACAGTCCTTAACTGGGCCTGTGAACCTGCATGGGCGCTCTGCCCTCTTTGGGGTCTTCACTACTCAGACCAATAG
Seq A exon
CATTCCTGGGTCTGCAGTCTGCGCCTTCTACCTAGATGACATTGAACGTGGCTTTGAGGGCAAGTTCAAGGAGCAGAGGAGTCTGGATGGGGCCTGGACTCCTGTGTCTGAGGACAAAGTCCCCTCACCCAG
Seq C2 exon
GCCAGGGTCCTGTGCAGGTGTGGGTGCAGCTGCCTTATTCTCCTCCTCTCAAGACCTGCCTGACGATGTCCTGCTCTTCATCAAGGCACACCCACTGCTGGATCCCGCTGTGCCACCTGCCACCCATCAACCTCTCCTCACTCTGACTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021101-'17-17,'17-14,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.289 C2=0.038
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.3=100)
A:
PF0140314=Sema=FE(10.6=100)
C2:
PF0140314=Sema=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGATCGCCACTGGACATC
R:
GGTGTGCCTTGATGAAGAGCA
Band lengths:
251-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]