Special

ENSG00000143434 @ hg19

Biotype
protein_coding
Gene Symbol
SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:10740]
Coordinates
chr1:151104161-151119104:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
-
19.24
46.91
0
Alternative 5'ss
23
chr1:151110462-151110484
-
80.76
46.91
0
Exon Skipping
96
chr1:151106436-151106531
-
5.12
73.03
0
Exon Skipping
132
chr1:151108924-151109055
-
92.72
24.68
0
Exon Skipping
172
chr1:151114980-151115151
-
92.44
100
0
Exon Skipping
261
chr1:151117500-151117760
-
12.51
39.29
0
Exon Skipping
91
chr1:151110792-151110882
-
93.07
27.27
0
Exon Skipping
120
chr1:151110462-151110581
-
90.96
40.05
0
Intron Retention
1998
chr1:151116911-151118908
-
32.68
78.62
0
Intron Retention
883
chr1:151105994-151106876
-
10.37
25
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000038777 Sema6c 1-to-1
Mouse mm9 ENSMUSG00000038777 Sema6c 1-to-1
Rat rn6 ENSRNOG00000021101 Sema6c 1-to-1
Cow bosTau6 ENSBTAG00000007281 SEMA6C 1-to-1
Chicken galGal4 ENSGALG00000027651 SEMA6C 1-to-1
Zebrafish danRer10 ENSDARG00000000189 sema6e 1-to-2
Zebrafish danRer10 ENSDARG00000002748 sema6d 1-to-2
Fruitfly dm6 FBgn0011259 Sema-1a 4-to-2
Fruitfly dm6 FBgn0016059 Sema-1b 4-to-2