Special

ENSMUSG00000038777 @ mm9

Biotype
protein_coding
Gene Symbol
Sema6c
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:MGI Symbol;Acc:MGI:1338032]
Coordinates
chr3:94964379-94977946:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
21.12
34.76
0
Alternative 5'ss
14
chr3:94964621-94964634
+
68.31
46.21
0
Alternative 5'ss
0
NA
+
84.86
68
0
Alternative 5'ss
46
chr3:94971603-94971648
+
15.14
68
0
Exon Skipping
96
chr3:94975713-94975808
+
33.04
85.74
0
Exon Skipping
49
chr3:94966537-94966585
+
38.09
68.6
0
Exon Skipping
145
chr3:94967049-94967193
+
6.63
23.81
0
Exon Skipping
90
chr3:94967354-94967443
+
16.87
69.43
0
Exon Skipping
64
chr3:94971335-94971398
+
92.46
46.42
0
Exon Skipping
102
chr3:94971921-94972022
+
96.3
40.34
0
Exon Skipping
91
chr3:94972221-94972311
+
96.75
28.57
0
Intron Retention
2492
chr3:94968436-94970927
+
10.01
31.28
0
Intron Retention
652
chr3:94975525-94976176
+
25.94
63.44
0
Intron Retention
292
chr3:94971043-94971334
+
26.05
67.88
0
Intron Retention
147
chr3:94971399-94971545
+
14.94
48.57
0
Intron Retention
318
chr3:94971603-94971920
+
22.04
44.61
0
Intron Retention
198
chr3:94972023-94972220
+
13.89
54.72
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000143434 SEMA6C 1-to-1
Human hg19 ENSG00000143434 SEMA6C 1-to-1
Rat rn6 ENSRNOG00000021101 Sema6c 1-to-1
Cow bosTau6 ENSBTAG00000007281 SEMA6C 1-to-1
Chicken galGal4 ENSGALG00000027651 SEMA6C 1-to-1
Zebrafish danRer10 ENSDARG00000000189 sema6e 1-to-2
Zebrafish danRer10 ENSDARG00000002748 sema6d 1-to-2
Fruitfly dm6 FBgn0011259 Sema-1a 4-to-2
Fruitfly dm6 FBgn0016059 Sema-1b 4-to-2