MmuEX0041643 @ mm9
Exon Skipping
Gene
ENSMUSG00000038777 | Sema6c
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:MGI Symbol;Acc:MGI:1338032]
Coordinates
chr3:94971921-94972628:+
Coord C1 exon
chr3:94971921-94972022
Coord A exon
chr3:94972221-94972311
Coord C2 exon
chr3:94972509-94972628
Length
91 bp
Sequences
Splice sites
3' ss Seq
AATCTGCTTCCTGTTCCCAGATA
3' ss Score
8.95
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GACGAATGCTACAACTACATCCGTGTTCTTGTTCCCTGGAACTCGCAGACACTTCTTGCCTGTGGAACAAATTCCTTCAGCCCTATGTGCCGCAGCTATGGG
Seq A exon
ATAACATCTCTGCAACAGGAGGGTGAGGAGCTGAGTGGGCAGGCTCGATGCCCCTTTGATGCCACCCAGTCCACTGTGGCCATCTTTGCAG
Seq C2 exon
AGGGCAGTTTGTACTCAGCCACAGCAGCAGATTTCCAGGCCAGTGATGCTGTAGTTTACAGAAGTCTTGGACCTCAGCCTCCACTCCGTTCTGCAAAGTATGACTCCAAGTGGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038777_MULTIEX2-5/7=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(1.5=83.3)
A:
PF0140314=Sema=FE(23.6=100),PF0140314=Sema=PU(1.1=9.7)
C2:
PF0140314=Sema=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAACTCGCAGACACTTC
R:
ACTTTGCAGAACGGAGTGGAG
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: