RnoEX0079393 @ rn6
Exon Skipping
Gene
ENSRNOG00000021101 | Sema6c
Description
semaphorin 6C [Source:RGD Symbol;Acc:3659]
Coordinates
chr2:196338352-196339047:+
Coord C1 exon
chr2:196338352-196338453
Coord A exon
chr2:196338637-196338727
Coord C2 exon
chr2:196338928-196339047
Length
91 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTCCTCTGTCCCCAGATA
3' ss Score
12.57
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GACGAATGCTACAACTACATCCGTGTTCTTGTTCCCTGGGACTCGCAGACACTCCTTGCCTGTGGAACAAATTCCTTCAGCCCTGTGTGTCGCAGCTATGGG
Seq A exon
ATAACATCTCTGCAACAGGAGGGTGAGGAGCTGAGTGGGCAAGCTCGATGCCCCTTTGATGCCACCCAGTCCACTGTGGCCATCTCTGCAG
Seq C2 exon
AGGGTAGTTTGTACTCAGCCACAGCAGCAGATTTCCAGGCCAGTGATGCTGTGGTTTACAGAAGCCTTGGACCTCAGCCCCCACTCCGTTCTGCAAAGTATGACTCCAAGTGGCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021101-'11-9,'11-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(26.2=100)
A:
PF0140314=Sema=FE(23.8=100),PF0140314=Sema=PU(1.5=12.9)
C2:
PF0140314=Sema=FE(9.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTTCTTGTTCCCTGGGAC
R:
TACTTTGCAGAACGGAGTGGG
Band lengths:
181-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]