BtaEX6015097 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007281 | SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr3:19722314-19723048:+
Coord C1 exon
chr3:19722314-19722415
Coord A exon
chr3:19722640-19722730
Coord C2 exon
chr3:19722929-19723048
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCTGTTCCTTCTGCCTCCAGATA
3' ss Score
11.82
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GACGAGTGCTACAACTACATTCGCGTTCTCGTGCCCTGGGACTCCCAGACGCTCCTTGCCTGTGGAACGAACTCATTCAGCCCCGTGTGCCGCAGCTATGGG
Seq A exon
ATAACTTCGCTGCAGCAGGAGGGTGAGGAGCTGAGTGGGCAAGCTCGATGCCCCTTTGATGCCACCCAGTCCAACGTGGCCGTGTTTGCAG
Seq C2 exon
AGGGCAGCCTGTACTCAGCCACAGCTGCAGACTTCCAGGCCAGTGATGCTGTGGTTTACCGAAGCCTTGGGCCTCAGCCCCCGCTCCGCTCCGCCAAGTACGACTCCAAGTGGCTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007281-'9-11,'9-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.8=100)
A:
PF0140314=Sema=FE(7.1=100)
C2:
PF0140314=Sema=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTTGCCTGTGGAACGAAC
R:
GGAGCCACTTGGAGTCGTACT
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]