GgaEX1051718 @ galGal4
Exon Skipping
Gene
ENSGALG00000027651 | SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr25:1781917-1782477:-
Coord C1 exon
chr25:1782376-1782477
Coord A exon
chr25:1782140-1782230
Coord C2 exon
chr25:1781917-1782033
Length
91 bp
Sequences
Splice sites
3' ss Seq
GGTGCTATGGGGTCCTGCAGGCG
3' ss Score
4.56
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
GACGGCTGTCACAACCACATCCGTGTGCTGCTGCCCCGCGATGCCCGGACCCTCTTTGTCTGTGGGACCAACGCCTTCAGCCCCGTGTGCCGCACCTACCAG
Seq A exon
GCGCTGACCCTACAGCAGGAGGGCGAGGAGCTGCCCGGACAGGCGCGCTGCCCCTTTGATGCACGGCAGAGCATTGCAGCCACTTTTGCTG
Seq C2 exon
ACGACCGTCTGTACTCCGCCACCGTGGCCGACTTCCAGGCGAGCGACGCCGTCATCTACCGCAGTGTGCGCGGCCCGGCGCTGCGCAGCATCAAGTACAGCTCCCGCTGGCTGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027651_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.0=100)
A:
PF0140314=Sema=FE(7.3=100)
C2:
PF0140314=Sema=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGCTGTCACAACCACATC
R:
CACACTGCGGTAGATGACGG
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]