Special

ENSMUSG00000038777 @ mm10

Biotype
protein_coding
Gene Symbol
Sema6c
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:MGI Symbol;Acc:MGI:1338032]
Coordinates
chr3:95160457-95174024:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
20.79
34.86
0
Alternative 5'ss
14
chr3:95160699-95160712
+
69.15
47.26
0
Alternative 5'ss
0
NA
+
84.4
68
0
Alternative 5'ss
46
chr3:95167681-95167726
+
15.6
68
0
Exon Skipping
96
chr3:95171791-95171886
+
32.16
85.94
0
Exon Skipping
49
chr3:95162615-95162663
+
39.14
68.62
0
Exon Skipping
145
chr3:95163127-95163271
+
6.76
23.67
0
Exon Skipping
90
chr3:95163432-95163521
+
17.67
69.32
0
Exon Skipping
64
chr3:95167413-95167476
+
91.96
37.97
0
Exon Skipping
102
chr3:95167999-95168100
+
96.59
34.86
0
Exon Skipping
91
chr3:95168299-95168389
+
97.02
28
0
Intron Retention
2492
chr3:95164514-95167005
+
9.88
29.95
0
Intron Retention
188
chr3:95171603-95171790
+
14.52
41.82
0
Intron Retention
292
chr3:95167121-95167412
+
26.9
65.32
0
Intron Retention
147
chr3:95167477-95167623
+
15.2
48.57
0
Intron Retention
318
chr3:95167681-95167998
+
22.9
67.38
0
Intron Retention
198
chr3:95168101-95168298
+
14.17
54.72
0
Intron Retention
1902
chr3:95160713-95162614
+
12.06
42.22
0
Intron Retention
768
chr3:95162664-95163431
+
9.91
46.4
0
Intron Retention
368
chr3:95171887-95172254
+
20.53
52.24
0
Intron Retention
817
chr3:95163522-95164338
+
12.01
47.7
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000143434 SEMA6C 1-to-1
Human hg19 ENSG00000143434 SEMA6C 1-to-1
Rat rn6 ENSRNOG00000021101 Sema6c 1-to-1
Cow bosTau6 ENSBTAG00000007281 SEMA6C 1-to-1
Chicken galGal4 ENSGALG00000027651 SEMA6C 1-to-1
Zebrafish danRer10 ENSDARG00000000189 sema6e 1-to-2
Zebrafish danRer10 ENSDARG00000002748 sema6d 1-to-2
Fruitfly dm6 FBgn0011259 Sema-1a 4-to-2
Fruitfly dm6 FBgn0016059 Sema-1b 4-to-2