MmuEX0041638 @ mm10
Exon Skipping
Gene
ENSMUSG00000038777 | Sema6c
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:MGI Symbol;Acc:MGI:1338032]
Coordinates
chr3:95160505-95164513:+
Coord C1 exon
chr3:95160505-95160712
Coord A exon
chr3:95163127-95163271
Coord C2 exon
chr3:95164339-95164513
Length
145 bp
Sequences
Splice sites
3' ss Seq
GACGAGGGCTTGCCTTGTAGGCC
3' ss Score
5.11
5' ss Seq
CTGGTACGC
5' ss Score
8.06
Exon sequences
Seq C1 exon
CCGATCTGCGGCGGGAATAGGGGCTCGTACTCGGACCCGAGGCTCTTGTAACCCGACAGTGCCCTGGAGTCTAAATCTAAGCACGGACGTTCGTCACATCTTGCCGAAGCCCCAACCACGGATTGCGAACTCTGCGAGGCGCGGAGCTAGGGGCCGCCTGCTGCTCCCTGGACCTTGCTGACCCGGATCTCGGAGCAAGTACCTTGGG
Seq A exon
GCCCAGAGTCTACTCTAGAAGACTTGGAATGGACAACTAAGGCTTGTTGTGATCTATCACAAAAGAAAGGACTCCTAGCTCCCTGACCTGATTAATGGAGTCTTTTCAGCACCTCACTTCAATCCCAAGGGAAGGCAGGAAGCTG
Seq C2 exon
GGCCGGCACATGGGTGAGGGGGTACCCCCTGGGGCGTGAGCTGCCCCGCACAGGATGCCCCGTGCCCCCCACTCCATGCCCCTGCTGCTCCTGCTGCTGTTGCTGTCATCGCTCCCCCAAGCCCAGGCTGCCTTTCCCCAGGACCCCACCCCTCTGTTGACCTCTGACCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038777_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.105
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGACGTTCGTCACATCTTG
R:
GGGAGCGATGACAGCAACAG
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types