MmuEX0041642 @ mm10
Exon Skipping
Gene
ENSMUSG00000038777 | Sema6c
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:MGI Symbol;Acc:MGI:1338032]
Coordinates
chr3:95167624-95168389:+
Coord C1 exon
chr3:95167624-95167680
Coord A exon
chr3:95167999-95168100
Coord C2 exon
chr3:95168299-95168389
Length
102 bp
Sequences
Splice sites
3' ss Seq
TAGAATTTTGGGTTCTCTAGGAC
3' ss Score
6.8
5' ss Seq
GGGGTACAG
5' ss Score
0.84
Exon sequences
Seq C1 exon
TTTCTGACATGGAGGAGTCAAGATATGGAGAACTGTGCAGTCCGGGGAAAGCTGACG
Seq A exon
GACGAATGCTACAACTACATCCGTGTTCTTGTTCCCTGGAACTCGCAGACACTTCTTGCCTGTGGAACAAATTCCTTCAGCCCTATGTGCCGCAGCTATGGG
Seq C2 exon
ATAACATCTCTGCAACAGGAGGGTGAGGAGCTGAGTGGGCAGGCTCGATGCCCCTTTGATGCCACCCAGTCCACTGTGGCCATCTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038777_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0140314=Sema=PD(35.6=84.0)
A:
PF0140314=Sema=FE(26.0=100)
C2:
PF0140314=Sema=FE(23.6=100),PF0140314=Sema=PU(1.1=9.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACATGGAGGAGTCAAGA
R:
CTGCAAAGATGGCCACAGTGG
Band lengths:
146-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types