DreEX6071237 @ danRer10
Exon Skipping
Gene
ENSDARG00000002748 | sema6d
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:ZFIN;Acc:ZDB-GENE-040426-1933]
Coordinates
chr19:408922-409660:+
Coord C1 exon
chr19:408922-408978
Coord A exon
chr19:409298-409399
Coord C2 exon
chr19:409570-409660
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTATTTCTGTGTGTTTTCAGGAT
3' ss Score
12.13
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
ATCCTGACGTGGAGATCCACAGACGTGTCCAAGTGCACCGTCAGAGGAAGAAACAGT
Seq A exon
GATGAATGTTACAATTATATCAAGGTTCTTGTTCCTCGTAATGACGAGACTCTGTTTGCCTGTGGAACAAACGCGCTGAATCCTGCCTGCCGCAACTACAGA
Seq C2 exon
TTGAGTTCACTGGAGCAGGTCGGACAGGAGCTCTTGGGTCAGGCAAGATGTCCATTTGAGTCTCGACAGTCCAATGTAGGAGTGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002748-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.2=100)
A:
PF0140314=Sema=FE(10.5=100)
C2:
PF0140314=Sema=FE(7.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGACGTGGAGATCCA
R:
TGCAAACACTCCTACATTGGACT
Band lengths:
147-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]