RnoEX0079396 @ rn6
Exon Skipping
Gene
ENSRNOG00000021101 | Sema6c
Description
semaphorin 6C [Source:RGD Symbol;Acc:3659]
Coordinates
chr2:196337997-196338727:+
Coord C1 exon
chr2:196337997-196338053
Coord A exon
chr2:196338352-196338453
Coord C2 exon
chr2:196338637-196338727
Length
102 bp
Sequences
Splice sites
3' ss Seq
TAGAATTTTGGGTTCTCTAGGAC
3' ss Score
6.8
5' ss Seq
GGGGTACTG
5' ss Score
2.74
Exon sequences
Seq C1 exon
TTTCTGACATGGCGGAGCCAAGACATGGAGAATTGTGCTGTCCGGGGAAAGCTGACG
Seq A exon
GACGAATGCTACAACTACATCCGTGTTCTTGTTCCCTGGGACTCGCAGACACTCCTTGCCTGTGGAACAAATTCCTTCAGCCCTGTGTGTCGCAGCTATGGG
Seq C2 exon
ATAACATCTCTGCAACAGGAGGGTGAGGAGCTGAGTGGGCAAGCTCGATGCCCCTTTGATGCCACCCAGTCCACTGTGGCCATCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021101_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(14.3=100)
A:
PF0140314=Sema=FE(26.2=100)
C2:
PF0140314=Sema=FE(23.8=100),PF0140314=Sema=PU(1.5=12.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACATGGAGAATTGTGCTGT
R:
CTGCAGAGATGGCCACAGTG
Band lengths:
130-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]