GgaEX1051717 @ galGal4
Exon Skipping
Gene
ENSGALG00000027651 | SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr25:1781917-1782782:-
Coord C1 exon
chr25:1782726-1782782
Coord A exon
chr25:1782376-1782477
Coord C2 exon
chr25:1781917-1782033
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTGATGGGGCTGTCCCACAGGAC
3' ss Score
7.36
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
AGCGTCACCTGGGAACCACGGGACAGAGCCGGCTGTGCTGTGCGGGGAGAGGTGCAG
Seq A exon
GACGGCTGTCACAACCACATCCGTGTGCTGCTGCCCCGCGATGCCCGGACCCTCTTTGTCTGTGGGACCAACGCCTTCAGCCCCGTGTGCCGCACCTACCAG
Seq C2 exon
ACGACCGTCTGTACTCCGCCACCGTGGCCGACTTCCAGGCGAGCGACGCCGTCATCTACCGCAGTGTGCGCGGCCCGGCGCTGCGCAGCATCAAGTACAGCTCCCGCTGGCTGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027651_MULTIEX1-2/3=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.4=100)
A:
PF0140314=Sema=FE(8.0=100)
C2:
PF0140314=Sema=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCACGGGACAGAGCC
R:
CGGGAGCTGTACTTGATGCTG
Band lengths:
152-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]