BtaEX6015098 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007281 | SEMA6C
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C [Source:HGNC Symbol;Acc:HGNC:10740]
Coordinates
chr3:19721900-19722730:+
Coord C1 exon
chr3:19721900-19721956
Coord A exon
chr3:19722314-19722415
Coord C2 exon
chr3:19722640-19722730
Length
102 bp
Sequences
Splice sites
3' ss Seq
TAGAATTCTGGATTCTCTAGGAC
3' ss Score
6.68
5' ss Seq
GGGGTACAA
5' ss Score
-0.67
Exon sequences
Seq C1 exon
TATCTAACATGGAGGAGCCAAGACGTGGAGAACTGTGCCGTGCGGGGCAAGCTGACG
Seq A exon
GACGAGTGCTACAACTACATTCGCGTTCTCGTGCCCTGGGACTCCCAGACGCTCCTTGCCTGTGGAACGAACTCATTCAGCCCCGTGTGCCGCAGCTATGGG
Seq C2 exon
ATAACTTCGCTGCAGCAGGAGGGTGAGGAGCTGAGTGGGCAAGCTCGATGCCCCTTTGATGCCACCCAGTCCAACGTGGCCGTGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007281-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.2=100)
A:
PF0140314=Sema=FE(7.8=100)
C2:
PF0140314=Sema=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGCCAAGACGTG
R:
GTTGGACTGGGTGGCATCAAA
Band lengths:
123-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]